Necessary Funding = $3M   |  Successfully Funded= $1M   

(See 'Path to a Cure' for a detailed explanation of the phases of research) 

Project: CRISPR/CAS9

 Dr. Alessandra Renieri, University of Siena, Italy

Funded year one 

What is CRISPR-Cas9 and how does it work? How do we edit genes? Jennifer Doudna, biochemist at UC Berkeley, explains.

Use CRiSPR/Cas9 technology to edit FOXG1 mutations. This project will cut the mutated allele entirely and replace it with a healthy gene. To allow the CRiSPR/Cas9 correction system to enter the cells, a viral system (AAV = Adeno-Associated Virus) will be used as carriers. Funded by Anonymous Donor.

Watch this short video on how the process would work

Project: Correcting FOXG1 loss-of-function in post-natal animals. Identification of the etiology of FOXG1 syndrome and the targets for drug discovery

Dr. Soo-Kyung Lee, Oregon Health and Sciences University

Funded year one

Dr Lee is an active contributor to the FOXG1 community. She proposes to use various FOXG1 mouse models understand the impact of loss of FOXG1 in different types of neurons (excitatory and inhibitory) as well as in oligodendrocyte precursors (another important cell type in the brain). She will then perform detailed characterization to examine the overall structure of the cerebral cortex, neuronal connections, electrophysiological activity, and behavioral outcomes in affected animals.

The investigator will also reintroduce FOXG1 at various time points, to determine whether (and when) symptoms can be reversed. Global gene expression analysis will be undertaken to identify any differences as a result of FOXG1 loss. This investigator has previously identified some functional overlap between FOXG1 and the gene FMR1, which causes Fragile X syndrome when defective. Fragile X syndrome is the most common single gene cause of autism and intellectual/developmental disabilities. Fragile X has a very active community that has pushed some drugs through to clinical trials. 

Project: RNA gene therapy to correct FOXG1 symptoms in iPS cells. Assessing the therapeutic potential of small activating RNAs in a patient-derived cellular model of FOXG1 syndrome

Dr. Angus Clarke, University of Cardiff

Funded year one

Dr Clarke has already completed much of the groundwork for this project thanks to funding supplied the UK FOXG1 Foundation. iPS cells have been derived from FOXG1 individuals with a variety of mutation types (deletion, missense, frameshift) and differentiated into neurons. The impact on target gene expression (candidates previously identified) will be investigated, as will the electrical activity of these neurons, compared to ‘normal’.

RNAa will be used to boost expression of FOXG1 to determine whether this can correct any symptoms identified in the patient-derived neurons. The electrical analysis methodology would represent a unique feature of this proposal.

Project: FOXG1 as target for Autism. Gene targets of FOXG1 in human brain progenitors

Dr. Flora Vaccarino, Yale School of Medicine

Funded year one

Dr Vaccarino has previously demonstrated that patient-derived iPS neurons from individuals with autism spectrum disorder and macrocephaly (large head size) have higher levels of FOXG1 gene expression. She also showed that there was an imbalance in the proportion of inhibitory and excitatory neurons. Restoring FOXG1 therapy to normal using RNAi reversed these findings, suggesting that FOXG1 may be important for how autism spectrum disorders develop and progress.

The current proposal would use iPS neurons to model the effect of reduced and elevated expression of FOXG1 on global gene expression and the balance of inhibitory/excitatory neurons. Characterizing these pathways would help us understand the role of FOXG1 on important biological pathways. These target pathways could be candidates for drug therapies.

Project: RNA Gene Therapies for FOXG1 missense mutations. Developing an integrated platform for scalable, etiopathogenic-clinical profiling of subtle FOXG1 mutations and experimental, RNA-drive rescue of their histopathogenic effects

Dr. Antonello Mallamaci, SISSA and Dr Roberto Cilio, UCSF

Funded year one

Dr Mallamaci has a strong history characterizing the role of FOXG1 in brain development. The investigator aims to develop a streamlined protocol that can be used to consistently characterize the impact of various FOXG1 missense mutations. Given the investigators background, the proposed measures are focused around aspects of brain development that FOXG1 has been shown to be important for, like: self-renewal of early neural cells, differentiation into inhibitory and excitatory neurons, etc.

The investigator will also seek to determine whether bad outcomes of FOXG1 missense variants can be corrected using RNA-based gene therapy (either boosting FOXG1 expression, or silencing it).

National Institute of Health Natural Study

In October of 2014 the National Institute of Health awarded a $29 million five-year grant to continue the Rett Syndrome Natural History Study. FOXG1 Syndrome, MECP2 Duplication Syndrome and CDKL5 Syndrome, sister syndromes to Rett, were added into this groundbreaking study. The goals of this grant are to understand the core clinical features of each disorder.